| Turner's syndrome | Loss of part or all of X chromosome | Associated with UC and colonic CD |
| Hermansky-Pudlak | Autosomal recessive chromosome 10q23 | Granulomatous colitis, oculocutaneous albinism, platelet dysfunction, pulmonary fibrosis |
| Wiskott-Aldrich syndrome (WAS) | X-linked recessive disorder, loss of WAS protein function | Colitis, immunodeficiency, severely dysfunctional platelets, and thrombocytopenia |
| Glycogen Storage disease | Deficiency of the glucose-6-phosphate transport protein type B1 | Granulomatous colitis, presents in infancy with hypoglycemia, growth failure, hepatomegaly, and neutropenia |
| Immune dysregulation polyendocrinopathy, enteropathy X-linked (IPEX) | Loss of FoxP3 transcription factor and T regulatory cell function | UC-like autoimmune enteropathy, with endocrinopathy (neonatal type 1 diabetes or thyroiditis), dermatitis |
| Early onset IBD | Deficient IL-10 receptor function | Severe, refractory IBD in early life |
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